Functional Genomics and Bioinformatics

A.Y. 2024/2025
10
Max ECTS
88
Overall hours
SSD
BIO/11 BIO/18
Language
English
Learning objectives
Functional Genomics is the field of molecular genetics that is involved with assigning function and interactions to genes and their products and ranges from the detailed study of individual genes to large scale experimental approaches designed to capture genome wide effects and interactions. The aim of the course is to provide students a thorough overview of recent high-tech analytical approaches in molecular genetics, which have revolutionized genomics. In particular, Next Generation Sequencing has wide application to many functional genomics settings. Students of the Molecular Biotechnology and Bioinformatics Laurea Magistrale also follow an additional teaching unit of 4 CFU, where a range of these applications, are introduced, focusing on the nature of data generated, its strengths and limitations as well as computational and statistical approaches used to analyse genomic and transcriptomic datasets in various contexts. Practical sessions focusing on the use of the R programming language provide hands on experience of analysing genome-wide datasets, giving students the perspective required design, interpret and critically appraise large scale functional genomics studies and providing the foundation for the development of specific specialized expertise in bioinformatics.
The course is ideally linked to those dealing with bioinformatics and genetics.
Expected learning outcomes
After following this course, the students will have a deep knowledge about the latest genome wide and single gene approaches to study gene functions in model organisms. Teaching is especially focused on helping students gain the expertise required to decide which approaches and technologies to use to investigate biological pathways and the function of genes involved in them.
Single course

This course can be attended as a single course.

Course syllabus and organization

Single session

Responsible
Lesson period
First semester
Course syllabus
Whole genome sequencing
Genome annotation
Gene family analysis
Reverse genetics strategies in prokaryotes and eukaryotes
Genome editing strategies
Transcriptomics (incl. spatial)
Small non-coding RNA function and their analysis
Regulatory pathway analysis
Proteomics strategies
Protein interactions and complex formation
Protein analysis in living cells.
Prerequisites for admission
Good knowledge of molecular biology and genetics
Teaching methods
Frontal teaching with a high level of teacher interaction supported by projected teaching material that is available to students from a dedicated website. Extensive discussions to allow the development of critical faculties and encourage constructive individual involvement in the teaching/learning process. 8 practical sessions in an informatics lecture theatre are included in the bioinformatics teaching unit.
Teaching Resources
This course is not covered by a text book since the latest technologies will be discussed. Literature will be provided during the lessons and through the website (https://mkaterfg.ariel.ctu.unimi.it/v5/home/Default.aspx). The material is made available only to registered students of the Degree Course in Molecular Biotechnology and Bioinformatics and should not be distributed to others.
Assessment methods and Criteria
To pass the examination students will have to follow the lessons since self-study is difficult due to the absence of a textbook that covers the course. The exam for the functional genomics teaching unit consists of 6 open questions of which the student selects 5 to answer. The examination is in English and the students have two hours to answer the questions.
While the bioinformatics teaching unit is evaluated through a written exam consisting of around 15 multiple choice questions and 3 or 4 open questions to which short answers must be provided. Multiple choice and open questions carry the same total weight (50%).
Final votes are a weighted mean of results obtained from each teaching unit (6/10+4/10).
BIO/11 - MOLECULAR BIOLOGY - University credits: 4
BIO/18 - GENETICS - University credits: 6
Practicals: 16 hours
Lectures: 72 hours
Professor(s)
Reception:
Thursday 14.00 - 17.00
Via Celoria 26, Tower B, 2nd floor