Nutrients Cycle in Soil-Plant Systems
A.Y. 2024/2025
Learning objectives
The course aims to provide an in-depth knowledge of the interactions between the plant and the different components of the soil, deepening the knowledge of chemical and biological mechanisms that influence the availability of nutrients in the soil and the responses of plants to different nutrient inputs and environmental conditions. Moreover the course will investigated speciation of ions and the effect on plant and environment nutrient availability considering, also,
knowledge on the impact of organic and inorganic pollutants on the soil-plant system with particular attention to the quality and safety of plant productions.
knowledge on the impact of organic and inorganic pollutants on the soil-plant system with particular attention to the quality and safety of plant productions.
Expected learning outcomes
At the end of the course the student should have acquired:
- knowledge of the physical, chemical and biological processes that control the nutrient and pollutant availability in soil;
- biochemical and physiological knowledge of soil-plant relationships in the response to nutrients and to the presence of inorganic and organic pollutants;
- critical ability regarding environmental defense issues in an agro-environmental context.
- knowledge of the physical, chemical and biological processes that control the nutrient and pollutant availability in soil;
- biochemical and physiological knowledge of soil-plant relationships in the response to nutrients and to the presence of inorganic and organic pollutants;
- critical ability regarding environmental defense issues in an agro-environmental context.
Lesson period: Second semester
Assessment methods: Esame
Assessment result: voto verbalizzato in trentesimi
Single course
This course can be attended as a single course.
Course syllabus and organization
Single session
Responsible
Lesson period
Second semester
Course syllabus
To provide a multidisciplinary teaching approach to the topics, the program will involve alternating lectures delivered by the professors participating in the course.
THE RHIZOSPHERE: INTERACTIONS BETWEEN PLANT-SOIL-MICROORGANISMS (CFU = 1)
₋ Plant growth. Root development: characteristics, genetic and hormonal control. Root growth responses to environmental factors.
₋ The rhizosphere: definition and characteristics. Biochemical activities of the root that influence the rhizosphere.
₋ Rhizosphere habitat: microbial niches in the soil-plant system. Conditions influencing microbial growth and distribution.
₋ Ecological relationships between microorganisms and micro- and macro-organisms. Competition and cooperation.
PLANT MINERAL NUTRITION: GENERAL ASPECTS, SOIL FERTILITY, BIOGEOCHEMICAL CYCLES OF NUTRIENTS, PLANT ACQUISITION OF NUTRIENTS (CFU=3.5)
₋ Plant mineral nutrition: essential elements and beneficial elements. Nutrient availability in soil.
₋ Critical concentration: deficiency, availability, and toxicity of mineral nutrients. Visual symptom analysis and laboratory methods. Nutrient use efficiency in plants.
₋ Metabolic diversity of microorganisms in the carbon cycle in oxic and anoxic environments. Microbial activities contributing to soil fertility.
₋ Degradation of the different parts of organic matter: microbial metabolisms in aerobic and anaerobic conditions. Humus formation.
₋ Microbial nitrogen metabolism in oxic and anoxic environments. Diazotrophy. Denitrification. Ammonification. Nitrification. Interventions in the nitrification process by the formulation of ammoniacal fertilizers.
₋ Nitrogen acquisition in plants. Root nitrate uptake: transport and regulation. Nitrogen reduction and assimilation: enzymes and metabolic regulation. Ammonium management in plants. Contribution of organic nitrogen to plant nutrition.
₋ Microbial phosphorus metabolism. Biogeochemical cycles of phosphorus and potassium. Microbial sulfur metabolism. Assimilatory and dissimilatory sulfate reduction. Sulfur oxidation.
₋ Microbial iron metabolism. Iron oxidation. Dissimilatory iron reduction.
₋ Phosphorus acquisition in plants. Phosphate absorption and transport in plants. Plant responses to phosphorus deficiency: root architecture and biochemical responses.
₋ Acquisition and roles of cationic macronutrients: magnesium, calcium, potassium.
₋ Micronutrients: roles, plant acquisition, and responses to deficiency. Focus on iron: species with Strategy I and II and nutritional interactions.
₋ Beneficial nutritional elements: definition and insights on the effects of sodium, silicon, and selenium.
SOILS WITH REDUCED FERTILITY: ENVIRONMENTAL AND MICROBIOLOGICAL ASPECTS, PHYSIOLOGICAL AND BIOCHEMICAL RESPONSES OF PLANTS (CFU=1.25)
₋ Effect of water stress, salinity, and soil acidity on rhizospheric microbial communities.
₋ Waterlogging and flooding stresses. Plant metabolic responses and their regulation. Morphological and developmental changes. Roles of ethylene. The case study of rice.
₋ Water deficit stress: causes and effects on soil characteristics, root development, and plant physiology.
₋ Halophytes and glycophytes plant species. Salinity stress: the osmotic and ionic phases. Physiological and metabolic effects on plants. Plant strategies for stress response and adaptation.
₋ Acid soil-induced stress. Aluminum toxicity: effects on plant growth and nutritional status. Adaptation mechanisms: detoxification and accumulation.
PLANT GROWTH PROMOTION: PLANT-MICROORGANISM RELATIONSHIPS, INOCULANTS, BIO-FERTILIZERS, AND BIOSTIMULANTS (CFU=2)
₋ Microbial populations in rhizospheric microhabitats. The rhizosphere effect on microbial communities.
₋ Plant growth-promoting microorganisms (increased nutrient availability, production of plant hormone-like molecules, fungal resistance, induction of systemic resistance).
₋ Microbe-plant communication. Plant-microbe symbiosis: symbiotic nitrogen fixation, rhizobia, mycorrhizae.
₋ Practices of microbial bioinoculation: bioinoculants, soil transplanting.
₋ Secondary metabolism in root interactions: defining secondary metabolites and examples of their roles in defense and communication in the soil.
₋ Plant physiology aspects related to establishing associations and symbiosis with soil microorganisms.
₋ Climate change: effects on plant mineral nutrition and rhizospheric interactions.
₋ Biostimulants: definition, uses, and potential effects on root activities influencing plant mineral nutrition and rhizospheric interactions.
IMPACT OF HUMAN ACTIVITIES: INORGANIC AND ORGANIC POLLUTANTS AND THEIR IMPACT ON PLANT GROWTH, CONTAINMENT TECHNIQUES, ECOSYSTEM SERVICES OF MICROORGANISMS FOR AGRICULTURAL SUSTAINABILITY (CFU=2.25)
₋ Use of manure and sewage sludge in agriculture: spread of pathogens, role of microorganisms in pollution leading to nitrogen losses in water and air.
₋ Microbial reactions influencing heavy metal bioavailability. Arsenic in rice paddies.
₋ In-depth analysis of heavy metals. Factors involved in heavy metal distribution in plants. Toxicity, detoxification, and tolerance mechanisms. Case studies: cadmium and arsenic.
₋ The role of sulfur in detoxifying toxic substances in plants.
₋ Heavy metals and phytoremediation: basic concepts and application.
₋ Heavy metals and food safety.
₋ Rhizodegradation: microbial biodegradation of organic contaminants in association with plants.
₋ Organic contaminants: implications for agricultural productivity and food safety.
THE RHIZOSPHERE: INTERACTIONS BETWEEN PLANT-SOIL-MICROORGANISMS (CFU = 1)
₋ Plant growth. Root development: characteristics, genetic and hormonal control. Root growth responses to environmental factors.
₋ The rhizosphere: definition and characteristics. Biochemical activities of the root that influence the rhizosphere.
₋ Rhizosphere habitat: microbial niches in the soil-plant system. Conditions influencing microbial growth and distribution.
₋ Ecological relationships between microorganisms and micro- and macro-organisms. Competition and cooperation.
PLANT MINERAL NUTRITION: GENERAL ASPECTS, SOIL FERTILITY, BIOGEOCHEMICAL CYCLES OF NUTRIENTS, PLANT ACQUISITION OF NUTRIENTS (CFU=3.5)
₋ Plant mineral nutrition: essential elements and beneficial elements. Nutrient availability in soil.
₋ Critical concentration: deficiency, availability, and toxicity of mineral nutrients. Visual symptom analysis and laboratory methods. Nutrient use efficiency in plants.
₋ Metabolic diversity of microorganisms in the carbon cycle in oxic and anoxic environments. Microbial activities contributing to soil fertility.
₋ Degradation of the different parts of organic matter: microbial metabolisms in aerobic and anaerobic conditions. Humus formation.
₋ Microbial nitrogen metabolism in oxic and anoxic environments. Diazotrophy. Denitrification. Ammonification. Nitrification. Interventions in the nitrification process by the formulation of ammoniacal fertilizers.
₋ Nitrogen acquisition in plants. Root nitrate uptake: transport and regulation. Nitrogen reduction and assimilation: enzymes and metabolic regulation. Ammonium management in plants. Contribution of organic nitrogen to plant nutrition.
₋ Microbial phosphorus metabolism. Biogeochemical cycles of phosphorus and potassium. Microbial sulfur metabolism. Assimilatory and dissimilatory sulfate reduction. Sulfur oxidation.
₋ Microbial iron metabolism. Iron oxidation. Dissimilatory iron reduction.
₋ Phosphorus acquisition in plants. Phosphate absorption and transport in plants. Plant responses to phosphorus deficiency: root architecture and biochemical responses.
₋ Acquisition and roles of cationic macronutrients: magnesium, calcium, potassium.
₋ Micronutrients: roles, plant acquisition, and responses to deficiency. Focus on iron: species with Strategy I and II and nutritional interactions.
₋ Beneficial nutritional elements: definition and insights on the effects of sodium, silicon, and selenium.
SOILS WITH REDUCED FERTILITY: ENVIRONMENTAL AND MICROBIOLOGICAL ASPECTS, PHYSIOLOGICAL AND BIOCHEMICAL RESPONSES OF PLANTS (CFU=1.25)
₋ Effect of water stress, salinity, and soil acidity on rhizospheric microbial communities.
₋ Waterlogging and flooding stresses. Plant metabolic responses and their regulation. Morphological and developmental changes. Roles of ethylene. The case study of rice.
₋ Water deficit stress: causes and effects on soil characteristics, root development, and plant physiology.
₋ Halophytes and glycophytes plant species. Salinity stress: the osmotic and ionic phases. Physiological and metabolic effects on plants. Plant strategies for stress response and adaptation.
₋ Acid soil-induced stress. Aluminum toxicity: effects on plant growth and nutritional status. Adaptation mechanisms: detoxification and accumulation.
PLANT GROWTH PROMOTION: PLANT-MICROORGANISM RELATIONSHIPS, INOCULANTS, BIO-FERTILIZERS, AND BIOSTIMULANTS (CFU=2)
₋ Microbial populations in rhizospheric microhabitats. The rhizosphere effect on microbial communities.
₋ Plant growth-promoting microorganisms (increased nutrient availability, production of plant hormone-like molecules, fungal resistance, induction of systemic resistance).
₋ Microbe-plant communication. Plant-microbe symbiosis: symbiotic nitrogen fixation, rhizobia, mycorrhizae.
₋ Practices of microbial bioinoculation: bioinoculants, soil transplanting.
₋ Secondary metabolism in root interactions: defining secondary metabolites and examples of their roles in defense and communication in the soil.
₋ Plant physiology aspects related to establishing associations and symbiosis with soil microorganisms.
₋ Climate change: effects on plant mineral nutrition and rhizospheric interactions.
₋ Biostimulants: definition, uses, and potential effects on root activities influencing plant mineral nutrition and rhizospheric interactions.
IMPACT OF HUMAN ACTIVITIES: INORGANIC AND ORGANIC POLLUTANTS AND THEIR IMPACT ON PLANT GROWTH, CONTAINMENT TECHNIQUES, ECOSYSTEM SERVICES OF MICROORGANISMS FOR AGRICULTURAL SUSTAINABILITY (CFU=2.25)
₋ Use of manure and sewage sludge in agriculture: spread of pathogens, role of microorganisms in pollution leading to nitrogen losses in water and air.
₋ Microbial reactions influencing heavy metal bioavailability. Arsenic in rice paddies.
₋ In-depth analysis of heavy metals. Factors involved in heavy metal distribution in plants. Toxicity, detoxification, and tolerance mechanisms. Case studies: cadmium and arsenic.
₋ The role of sulfur in detoxifying toxic substances in plants.
₋ Heavy metals and phytoremediation: basic concepts and application.
₋ Heavy metals and food safety.
₋ Rhizodegradation: microbial biodegradation of organic contaminants in association with plants.
₋ Organic contaminants: implications for agricultural productivity and food safety.
Prerequisites for admission
Basic knowledge in the areas of plant physiology and biochemistry and of microbiology is recommended.
Teaching methods
Classroom lectures. Attendance is not mandatory (but recommended). For non-attending students the program and reference materials are identical.
Teaching Resources
The material presented in class will be made available on the Ariel platform as .pdf files.
The teachers will provide a collection of scientific articles on some of the topics.
Recommended books:
- Marschner's Mineral Nutrition of Plants. 2022- IV edition. Editors: Rengel, Cakmak, White. Academic Press. Paperback ISBN: 9780128197738, eBook ISBN: 9780323853521.
- M.T. Madigan, K.S. Bender, D.H. Buckley, W.M. Sattley, D.A. Stahl. Brock - Biology of microrganisms. 2022, 16th edition. Ed. Pearson.
The teachers will provide a collection of scientific articles on some of the topics.
Recommended books:
- Marschner's Mineral Nutrition of Plants. 2022- IV edition. Editors: Rengel, Cakmak, White. Academic Press. Paperback ISBN: 9780128197738, eBook ISBN: 9780323853521.
- M.T. Madigan, K.S. Bender, D.H. Buckley, W.M. Sattley, D.A. Stahl. Brock - Biology of microrganisms. 2022, 16th edition. Ed. Pearson.
Assessment methods and Criteria
Student learning is evaluated via an oral interview. The exam encompasses questions covering all course topics and lasts approximately 30 minutes. The exam aims to evaluate: the attainment of expected learning outcomes; the student's ability to articulate ideas; proficiency in specific terminology; and the student's capacity to apply knowledge in hypothetical scenarios. Grades are awarded on a scale of thirty (30/30).
Students with SLD or disability certifications are kindly requested to contact the teacher at least 15 days before the date of the exam session to agree on individual exam requirements. In the email please make sure to add in cc the competent offices: [email protected] (for students with SLD) o [email protected] (for students with disability).
Students with SLD or disability certifications are kindly requested to contact the teacher at least 15 days before the date of the exam session to agree on individual exam requirements. In the email please make sure to add in cc the competent offices: [email protected] (for students with SLD) o [email protected] (for students with disability).
AGR/13 - AGRICULTURAL CHEMISTRY - University credits: 6
AGR/16 - AGRICULTURAL MICROBIOLOGY - University credits: 4
AGR/16 - AGRICULTURAL MICROBIOLOGY - University credits: 4
Lessons: 80 hours
Shifts:
Professor(s)
Reception:
By appointment. Please request by email.
At the office. Bldg. 21090, Faculty of Agricultural and Food Sciences, Milano. Alternatively, online on the Teams platform.
Reception:
Upon appointment
Via Mangiagalli 25, 20133 Milano, 3° floor